Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | W A angle_step (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) apply_flat_field_correction() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) ApplyAttenuators (class in ewokstomo.tasks.energycalculation) assembly_points_pixels (ewokstomo.tasks.stitch_volumes.RefineVolumePositionOutputsModel attribute) (ewokstomo.tasks.stitch_volumes.StitchMatchedSlicesInputsModel attribute) B batch_size (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) bliss_hdf5_path (ewokstomo.tasks.nxtomomill.FluoToNxInputModel attribute) (ewokstomo.tasks.nxtomomill.H5ToNxInputModel attribute) bounds (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryInputModel attribute) build_nxtomo_from_inputs() (in module ewokstomo.tasks.nxtomo_utils) build_references_gallery() (in module ewokstomo.tasks.buildgallery) BuildDataPortalMetadata (class in ewokstomo.tasks.dataportalupload) BuildDataPortalMetadataInputModel (class in ewokstomo.tasks.dataportalupload) BuildDataPortalMetadataOutputModel (class in ewokstomo.tasks.dataportalupload) BuildProjectionsGallery (class in ewokstomo.tasks.buildgallery) BuildReferencesGallery (class in ewokstomo.tasks.buildgallery) BuildSlicesGallery (class in ewokstomo.tasks.buildgallery) BuildVolumeGallery (class in ewokstomo.tasks.buildgallery) C clean_angle_key() (in module ewokstomo.tasks.buildgallery) ComputeBMSpectrum (class in ewokstomo.tasks.energycalculation) ComputeWigglerSpectrum (class in ewokstomo.tasks.energycalculation) config_dict (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceInputModel attribute) (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeInputsModel attribute) converted_volume_path (ewokstomo.tasks.convert_volume.ConvertVolumeTo16BitOutputsModel attribute) ConvertVolumeTo16Bit (class in ewokstomo.tasks.convert_volume) ConvertVolumeTo16BitInputsModel (class in ewokstomo.tasks.convert_volume) ConvertVolumeTo16BitOutputsModel (class in ewokstomo.tasks.convert_volume) correlation_window_shape_px (ewokstomo.tasks.stitch_volumes.RefineVolumePositionInputsModel attribute) cursor() (ewokstomo.tests.online.mock.FakeImageStream method) (ewokstomo.tests.online.mock.FakeStream method) D dark_reduction_method (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) DataPlaceHolder (class in ewokstomo.tasks.online.nabu_pipeline) dataportal_metadata (ewokstomo.tasks.dataportalupload.BuildDataPortalMetadataOutputModel attribute) DataPortalUpload (class in ewokstomo.tasks.dataportalupload) DataPortalUploadInputModel (class in ewokstomo.tasks.dataportalupload) dataset (ewokstomo.tasks.dataportalupload.DataPortalUploadInputModel attribute) distance_m (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) downsample_factor (ewokstomo.tasks.stitch_volumes.RefineVolumePositionInputsModel attribute) dry_run (ewokstomo.tasks.dataportalupload.DataPortalUploadInputModel attribute) E energy_keV (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) ewokstomo module ewokstomo.tasks module ewokstomo.tasks.buildgallery module ewokstomo.tasks.convert_volume module ewokstomo.tasks.dataportalupload module ewokstomo.tasks.energycalculation module ewokstomo.tasks.linkresults module ewokstomo.tasks.nxtomo_utils module ewokstomo.tasks.nxtomomill module ewokstomo.tasks.online module ewokstomo.tasks.online.nabu_pipeline module ewokstomo.tasks.online.reconstruct_slice module ewokstomo.tasks.online.reducedarkflat module ewokstomo.tasks.online.utils module ewokstomo.tasks.reconstruct_slice module ewokstomo.tasks.reconstruct_volume module ewokstomo.tasks.reducedarkflat module ewokstomo.tasks.stitch_volumes module ewokstomo.tasks.tomobasictonxtomo module ewokstomo.tasks.utils module ewokstomo.tests module ewokstomo.tests.online module ewokstomo.tests.online.mock module ewokstomo.tests.test_stitch_volumes module ewokstomo.tests.test_utils module ewokstomo.workflows module extra_options (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) F FakeCursor (class in ewokstomo.tests.online.mock) FakeImageStream (class in ewokstomo.tests.online.mock) FakeListStream (class in ewokstomo.tests.online.mock) FakeMotorStream (class in ewokstomo.tests.online.mock) FakeScan (class in ewokstomo.tests.online.mock) FakeScanWithMotor (class in ewokstomo.tests.online.mock) FakeStream (class in ewokstomo.tests.online.mock) FakeUpdatableScan (class in ewokstomo.tests.online.mock) flat_reduction_method (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) FluoToNx (class in ewokstomo.tasks.nxtomomill) FluoToNxInputModel (class in ewokstomo.tasks.nxtomomill) FluoToNxOutputModel (class in ewokstomo.tasks.nxtomomill) G gallery_image_path (ewokstomo.tasks.buildgallery.SlicesGalleryOutputModel attribute) gallery_image_paths (ewokstomo.tasks.buildgallery.ReferencesGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryOutputModel attribute) gallery_path (ewokstomo.tasks.buildgallery.ProjectionsGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryOutputModel attribute) get_beam_intensities() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) get_darks_from_h5() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) get_flats_from_h5() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) get_gallery_dir() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) (ewokstomo.tasks.buildgallery.BuildSlicesGallery method) get_gallery_file_path() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) (ewokstomo.tasks.buildgallery.BuildSlicesGallery method) get_image_stream_name() (in module ewokstomo.tasks.online.utils) get_json_file() (in module ewokstomo.tests.test_stitch_volumes) get_nabu_pipeline() (in module ewokstomo.tasks.online.nabu_pipeline) get_proj_from_data_url() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) get_projections_by_angle_step() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) get_reconstruction_z_region_and_margin() (in module ewokstomo.tasks.online.nabu_pipeline) get_reduction_function() (ewokstomo.tasks.online.reducedarkflat.OnlineReduceDarkFlat method) guess_distances_mm (ewokstomo.tasks.stitch_volumes.RefineVolumePositionInputsModel attribute) H H5ToNx (class in ewokstomo.tasks.nxtomomill) H5ToNxInputModel (class in ewokstomo.tasks.nxtomomill) H5ToNxOutputModel (class in ewokstomo.tasks.nxtomomill) I icat_client_factory() (ewokstomo.tasks.dataportalupload.DataPortalUpload static method) image_size (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryInputModel attribute) L LinkSlices (class in ewokstomo.tasks.linkresults) LinkSlicesInputModel (class in ewokstomo.tasks.linkresults) LinkSlicesOutputModel (class in ewokstomo.tasks.linkresults) LinkVolumes (class in ewokstomo.tasks.linkresults) LinkVolumesInputModel (class in ewokstomo.tasks.linkresults) LinkVolumesOutputModel (class in ewokstomo.tasks.linkresults) load_reduced_frames() (in module ewokstomo.tasks.online.utils) M metadata (ewokstomo.tasks.dataportalupload.DataPortalUploadInputModel attribute) model_config (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ProjectionsGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryOutputModel attribute) (ewokstomo.tasks.convert_volume.ConvertVolumeTo16BitInputsModel attribute) (ewokstomo.tasks.convert_volume.ConvertVolumeTo16BitOutputsModel attribute) (ewokstomo.tasks.dataportalupload.BuildDataPortalMetadataInputModel attribute) (ewokstomo.tasks.dataportalupload.BuildDataPortalMetadataOutputModel attribute) (ewokstomo.tasks.dataportalupload.DataPortalUploadInputModel attribute) (ewokstomo.tasks.linkresults.LinkSlicesInputModel attribute) (ewokstomo.tasks.linkresults.LinkSlicesOutputModel attribute) (ewokstomo.tasks.linkresults.LinkVolumesInputModel attribute) (ewokstomo.tasks.linkresults.LinkVolumesOutputModel attribute) (ewokstomo.tasks.nxtomomill.FluoToNxInputModel attribute) (ewokstomo.tasks.nxtomomill.FluoToNxOutputModel attribute) (ewokstomo.tasks.nxtomomill.H5ToNxInputModel attribute) (ewokstomo.tasks.nxtomomill.H5ToNxOutputModel attribute) (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceOutputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceInputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceOutputModel attribute) (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeInputsModel attribute) (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeOutputsModel attribute) (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatOutputModel attribute) (ewokstomo.tasks.stitch_volumes.RefineVolumePositionInputsModel attribute) (ewokstomo.tasks.stitch_volumes.RefineVolumePositionOutputsModel attribute) (ewokstomo.tasks.stitch_volumes.StitchMatchedSlicesInputsModel attribute) (ewokstomo.tasks.stitch_volumes.StitchMatchedSlicesOutputsModel attribute) module ewokstomo ewokstomo.tasks ewokstomo.tasks.buildgallery ewokstomo.tasks.convert_volume ewokstomo.tasks.dataportalupload ewokstomo.tasks.energycalculation ewokstomo.tasks.linkresults ewokstomo.tasks.nxtomo_utils ewokstomo.tasks.nxtomomill ewokstomo.tasks.online ewokstomo.tasks.online.nabu_pipeline ewokstomo.tasks.online.reconstruct_slice ewokstomo.tasks.online.reducedarkflat ewokstomo.tasks.online.utils ewokstomo.tasks.reconstruct_slice ewokstomo.tasks.reconstruct_volume ewokstomo.tasks.reducedarkflat ewokstomo.tasks.stitch_volumes ewokstomo.tasks.tomobasictonxtomo ewokstomo.tasks.utils ewokstomo.tests ewokstomo.tests.online ewokstomo.tests.online.mock ewokstomo.tests.test_stitch_volumes ewokstomo.tests.test_utils ewokstomo.workflows N nabu_dict (ewokstomo.tasks.convert_volume.ConvertVolumeTo16BitInputsModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceOutputModel attribute) (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeOutputsModel attribute) nx_path (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.nxtomomill.FluoToNxInputModel attribute) (ewokstomo.tasks.nxtomomill.FluoToNxOutputModel attribute) (ewokstomo.tasks.nxtomomill.H5ToNxInputModel attribute) (ewokstomo.tasks.nxtomomill.H5ToNxOutputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceInputModel attribute) (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeInputsModel attribute) (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) O OnlineReconstructSlice (class in ewokstomo.tasks.online.reconstruct_slice) OnlineReconstructSliceInputModel (class in ewokstomo.tasks.online.reconstruct_slice) OnlineReconstructSliceOutputModel (class in ewokstomo.tasks.online.reconstruct_slice) OnlineReduceDarkFlat (class in ewokstomo.tasks.online.reducedarkflat) output_dtype (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) output_format (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryInputModel attribute) (ewokstomo.tasks.convert_volume.ConvertVolumeTo16BitInputsModel attribute) output_path (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) (ewokstomo.tasks.stitch_volumes.StitchMatchedSlicesInputsModel attribute) overwrite (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryInputModel attribute) (ewokstomo.tasks.linkresults.LinkSlicesInputModel attribute) (ewokstomo.tasks.linkresults.LinkVolumesInputModel attribute) (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) P pair_refined_shifts_mm (ewokstomo.tasks.stitch_volumes.RefineVolumePositionOutputsModel attribute) pair_refined_shifts_pixels (ewokstomo.tasks.stitch_volumes.RefineVolumePositionOutputsModel attribute) pixel_size_m (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) process_folder_path (ewokstomo.tasks.dataportalupload.DataPortalUploadInputModel attribute) processed_data_dir (ewokstomo.tasks.buildgallery.ProjectionsGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.SlicesGalleryOutputModel attribute) (ewokstomo.tasks.buildgallery.VolumeGalleryOutputModel attribute) processing_options (ewokstomo.tasks.dataportalupload.BuildDataPortalMetadataInputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceOutputModel attribute) (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeOutputsModel attribute) ProjectionsGalleryInputModel (class in ewokstomo.tasks.buildgallery) ProjectionsGalleryOutputModel (class in ewokstomo.tasks.buildgallery) R read() (ewokstomo.tests.online.mock.FakeCursor method) read_stream() (ewokstomo.tasks.online.reducedarkflat.OnlineReduceDarkFlat method) reconstructed_slice_path (ewokstomo.tasks.buildgallery.SlicesGalleryInputModel attribute) (ewokstomo.tasks.linkresults.LinkSlicesInputModel attribute) (ewokstomo.tasks.linkresults.LinkSlicesOutputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceOutputModel attribute) reconstructed_slices_directory (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceOutputModel attribute) reconstructed_volume_path (ewokstomo.tasks.buildgallery.VolumeGalleryInputModel attribute) (ewokstomo.tasks.convert_volume.ConvertVolumeTo16BitInputsModel attribute) (ewokstomo.tasks.linkresults.LinkVolumesInputModel attribute) (ewokstomo.tasks.linkresults.LinkVolumesOutputModel attribute) (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeOutputsModel attribute) ReconstructSlice (class in ewokstomo.tasks.reconstruct_slice) ReconstructSliceInputModel (class in ewokstomo.tasks.reconstruct_slice) ReconstructSliceOutputModel (class in ewokstomo.tasks.reconstruct_slice) ReconstructVolume (class in ewokstomo.tasks.reconstruct_volume) ReconstructVolumeInputsModel (class in ewokstomo.tasks.reconstruct_volume) ReconstructVolumeOutputsModel (class in ewokstomo.tasks.reconstruct_volume) reduced_dark_path (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) reduced_darks_path (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryOutputModel attribute) (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatOutputModel attribute) reduced_flat_path (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) reduced_flats_path (ewokstomo.tasks.buildgallery.ProjectionsGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryInputModel attribute) (ewokstomo.tasks.buildgallery.ReferencesGalleryOutputModel attribute) (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatOutputModel attribute) ReduceDarkFlat (class in ewokstomo.tasks.reducedarkflat) ReduceDarkFlatInputModel (class in ewokstomo.tasks.reducedarkflat) ReduceDarkFlatOutputModel (class in ewokstomo.tasks.reducedarkflat) reference_dir_to_soft_link (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) ReferencesGalleryInputModel (class in ewokstomo.tasks.buildgallery) ReferencesGalleryOutputModel (class in ewokstomo.tasks.buildgallery) RefineVolumePosition (class in ewokstomo.tasks.stitch_volumes) RefineVolumePositionInputsModel (class in ewokstomo.tasks.stitch_volumes) RefineVolumePositionOutputsModel (class in ewokstomo.tasks.stitch_volumes) return_info (ewokstomo.tasks.reducedarkflat.ReduceDarkFlatInputModel attribute) rotation_motor (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) run() (ewokstomo.tasks.buildgallery.BuildProjectionsGallery method) (ewokstomo.tasks.buildgallery.BuildReferencesGallery method) (ewokstomo.tasks.buildgallery.BuildSlicesGallery method) (ewokstomo.tasks.buildgallery.BuildVolumeGallery method) (ewokstomo.tasks.convert_volume.ConvertVolumeTo16Bit method) (ewokstomo.tasks.dataportalupload.BuildDataPortalMetadata method) (ewokstomo.tasks.dataportalupload.DataPortalUpload method) (ewokstomo.tasks.energycalculation.ApplyAttenuators method) (ewokstomo.tasks.energycalculation.ComputeBMSpectrum method) (ewokstomo.tasks.energycalculation.ComputeWigglerSpectrum method) (ewokstomo.tasks.energycalculation.SpectrumStats method) (ewokstomo.tasks.linkresults.LinkSlices method) (ewokstomo.tasks.linkresults.LinkVolumes method) (ewokstomo.tasks.nxtomomill.FluoToNx method) (ewokstomo.tasks.nxtomomill.H5ToNx method) (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSlice method) (ewokstomo.tasks.online.reducedarkflat.OnlineReduceDarkFlat method) (ewokstomo.tasks.reconstruct_slice.ReconstructSlice method) (ewokstomo.tasks.reconstruct_volume.ReconstructVolume method) (ewokstomo.tasks.reducedarkflat.ReduceDarkFlat method) (ewokstomo.tasks.stitch_volumes.RefineVolumePosition method) (ewokstomo.tasks.stitch_volumes.StitchMatchedSlices method) (ewokstomo.tasks.tomobasictonxtomo.TomoBasicToNXtomo method) S save_reconstructed_slice() (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSlice method) scan_key (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) search_radius_px (ewokstomo.tasks.stitch_volumes.RefineVolumePositionInputsModel attribute) shape (ewokstomo.tasks.online.nabu_pipeline.DataPlaceHolder attribute) slice_index (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSliceInputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceInputModel attribute) (ewokstomo.tasks.reconstruct_slice.ReconstructSliceOutputModel attribute) slice_index_range (ewokstomo.tasks.reconstruct_volume.ReconstructVolumeInputsModel attribute) slices_link_collection_file (ewokstomo.tasks.linkresults.LinkSlicesOutputModel attribute) slices_link_root_file (ewokstomo.tasks.linkresults.LinkSlicesOutputModel attribute) SlicesGalleryInputModel (class in ewokstomo.tasks.buildgallery) SlicesGalleryOutputModel (class in ewokstomo.tasks.buildgallery) SpectrumStats (class in ewokstomo.tasks.energycalculation) stitched_path (ewokstomo.tasks.stitch_volumes.StitchMatchedSlicesOutputsModel attribute) StitchMatchedSlices (class in ewokstomo.tasks.stitch_volumes) StitchMatchedSlicesInputsModel (class in ewokstomo.tasks.stitch_volumes) StitchMatchedSlicesOutputsModel (class in ewokstomo.tasks.stitch_volumes) STREAM_TIMEOUT (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSlice attribute) T test_get_output_format_explicit() (in module ewokstomo.tests.test_utils) test_refine_and_stitch_orthogonal_slices() (in module ewokstomo.tests.test_stitch_volumes) test_refine_and_stitch_orthogonal_slices_for_volume_list() (in module ewokstomo.tests.test_stitch_volumes) test_refine_and_stitch_tiff_volumes() (in module ewokstomo.tests.test_stitch_volumes) test_stitch_2d_matches_intensity_before_blending() (in module ewokstomo.tests.test_stitch_volumes) test_stitch_volumes_workflow_forwards_volume_paths() (in module ewokstomo.tests.test_stitch_volumes) test_wait_for_scan_state_advances_until_reached() (in module ewokstomo.tests.test_utils) test_wait_for_scan_state_higher_state() (in module ewokstomo.tests.test_utils) test_wait_for_scan_state_reaches_desired_state() (in module ewokstomo.tests.test_utils) test_wait_for_scan_state_returns_when_already_reached() (in module ewokstomo.tests.test_utils) TomoBasicToNXtomo (class in ewokstomo.tasks.tomobasictonxtomo) TomoPath (class in ewokstomo.tasks.buildgallery) (class in ewokstomo.tasks.linkresults) U update() (ewokstomo.tests.online.mock.FakeUpdatableScan method) V volume_paths (ewokstomo.tasks.stitch_volumes.RefineVolumePositionInputsModel attribute) (ewokstomo.tasks.stitch_volumes.RefineVolumePositionOutputsModel attribute) (ewokstomo.tasks.stitch_volumes.StitchMatchedSlicesInputsModel attribute) volume_shifts_mm (ewokstomo.tasks.stitch_volumes.RefineVolumePositionOutputsModel attribute) volume_shifts_pixels (ewokstomo.tasks.stitch_volumes.RefineVolumePositionOutputsModel attribute) (ewokstomo.tasks.stitch_volumes.StitchMatchedSlicesInputsModel attribute) VolumeGalleryInputModel (class in ewokstomo.tasks.buildgallery) VolumeGalleryOutputModel (class in ewokstomo.tasks.buildgallery) volumes_link_collection_file (ewokstomo.tasks.linkresults.LinkVolumesOutputModel attribute) volumes_link_root_file (ewokstomo.tasks.linkresults.LinkVolumesOutputModel attribute) voxel_size_um (ewokstomo.tasks.stitch_volumes.RefineVolumePositionInputsModel attribute) W wait_for_scan_state() (in module ewokstomo.tasks.utils) WAITING_INTERVAL (ewokstomo.tasks.online.reconstruct_slice.OnlineReconstructSlice attribute)
